Ensuring rigorous purity in peptide synthesis is foundational for reproducible scientific results. When sourcing research compounds, understanding the analytical metrics on a Certificate of Analysis (COA) is vital.
### HPLC (High-Performance Liquid Chromatography)
HPLC purity measures the percentage of the target peptide peak relative to all UV-absorbing impurities. For demanding in vitro and in vivo assays, a purity threshold of ≥99.0% is standard to eliminate confounding bioactivity from truncated sequences or deletion peptides.
### Mass Spectrometry (LC-MS)
Liquid chromatography-mass spectrometry confirms the molecular weight of the synthesized compound. Discrepancies between theoretical and experimental mass indicate sequence errors or incomplete deprotection during solid-phase peptide synthesis (SPPS).
- 6 min read
- August 14, 2026
Peptides 101: Understanding HPLC Purity, Lyophilization, and Mass Spectrometry
n
Elena Rostova, MSc (Director of Analytical Quality)
MWpeps Molecular Biosciences Research Division